Publications

PLoS computational biology

2025

Authors: Parker NT, Hong V, Davis GS, Pomichowski M, Reyes IA, Xie F, Mueller NF, Rodriguez-Barraquer I, Tartof SY, Lewnard JA

Clinical infectious diseases : an official publication of the Infectious Diseases Society of America

2025

Authors: Murrill MT, Velásquez GE, Szumowski JD, Phillips A, Kim A, Yazdany J, Roberts ET, Habib AR, Batlle HR, Salazar J, Minter DJ, Louie JK, Ernst JD

Tuberculosis (Edinburgh, Scotland)

2025

Authors: Limberis JD, Nalyvayko A, Mohapatra A, Bouzeyen R, Howard Z, Zheng W, Metcalfe JZ

eLife

2025

Authors: Henrich TJ, Montgomery CP, Graf J, Ismail N, Mohandas S, Suthar MS, Brim H, Coffin JM, Pagaria A, Guzmán Rivera J, Vudali U, Keim P, Zhong G, McGrath R, Edwards B, García-Sastre A, Gennaro ML

Nature communications

2025

Authors: Thaweethai T, Donohue SE, Martin JN, Hornig M, Mosier JM, Shinnick DJ, Ashktorab H, Atieh O, Blomkalns A, Brim H, Chen Y, Cortez MM, Erdmann NB, Flaherman V, Goepfert P, Goldman JD, Hamburg NM, Han JE, Heath JR, Jacoby V, Jolley SE, Kelly JD, Kelly SW, Kim C, Krishnan JA, Letts R, Levitan EB, Modes ME, McComsey GA, Metz TD, Mullington JM, Ofotokun I, Okumura MJ, Paredes CC, Patterson TF, Peluso MJ, Reece R, Sherif ZA, Simhan HN, Simmons C, Singh U, Taylor BS, Taylor BD, Trinity JD, Troxel AB, Utz PJ, Vasey AJ, Weinberger E, Wiley Z, Wisnivesky J, Yee LM, Horwitz L, Foulkes AS, Levy BD, RECOVER-Adult Consortium

iScience

2025

Authors: Nelson CE, Kauffman KD, Osum KC, Sakai S, Buchanan J, Chanchu JM, Cohen M, Laux J, Dougi I, Barrows KM, Anidi IU, Lindestam Arlehamn CS, Sette A, Walker A, Shamsaddini A, Lack J, Ernst JD, Feng CG, Via LE, Fennelly KP, Carr SR, Barber DL

Science translational medicine

2025

Authors: Leddy O, Ogongo P, Huffaker J, Gan M, Milligan R, Mahmud S, Ni HM, Yuki Y, Bobosha K, Wassie L, Carrington M, Liu Q, Ernst JD, White FM, Bryson BD

bioRxiv : the preprint server for biology

2025

Authors: Zheng W, Limberis JD, Howard ZP, Mohapatra A, Takagi E, Ernst JD

The Journal of Immunology

2025

Authors: Lily Zemelko, Rafael Tibúrcio, Yen Y. Wang, Christian M. Constantz, Gina M. Borgo, Matthew H. Spitzer, Khamal Anglin, Jeffrey N. Martin, Michael J. Peluso, J. Daniel Kelly, Amelia N. Deitchman, Rachel L. Rutishauser

PLoS pathogens

2025

Authors: Chin J, Abeydeera N, Repasy T, Rivera-Lugo R, Mitchell G, Nguyen VQ, Zheng W, Richards A, Stevenson E, Swaney DL, Krogan NJ, Ernst JD, Cox JS, Budzik JM